PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.PF3JC
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 325aa    MW: 35788.6 Da    PI: 8.8898
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.PF3JCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11125167754
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+++L
  Araip.PF3JC 125 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLREL 167
                  79*********************66......***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.675118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16121181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-14124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-9124167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-11125171No hitNo description
Gene3DG3DSA:4.10.280.106.0E-16125180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.20E-5254314No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MPTMASFLDP HQASITATTD FGGFHHHNLE ELAQPTLFQK RAALRKNNSS SQQQQQGGVL  60
GEGDNNNNSM KRKVMMEMED NGSFDGSSAF NYDSGDDLIE TNNKKNNQKG GGAKNKKGMP  120
AKNLMAERRR RKKLNDRLYM LRSVVPKISK MDRASILGDA IEYLRELLQR INELHNELES  180
SPSTTTTTTN SGSSSLITAV PTVVASSSFY PLTPTPPSLP TRIKEEICPT SLPSPNAQPP  240
RVEVRLREGR AVNIHMFCGR KAGLLLSTMR ALDTLGLDIQ QAVISCFNGF ALDIFRAEQC  300
KEGQDVHPEQ IKAVLLDTAG YPAII
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126133ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016171964.10.0PREDICTED: transcription factor SCREAM2-like
SwissprotQ9LSE21e-114ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A072V0Y61e-128A0A072V0Y6_MEDTR; BHLH transcriptional factor
STRINGGLYMA04G37750.21e-121(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.47e-95bHLH family protein